PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488862.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 231aa    MW: 26023 Da    PI: 7.2805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000535779123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +C++ F ++  L  H++ H
  XP_016488862.1 57 FSCLYCSRKFCTSQALGGHQNAH 79
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.35E-55484No hitNo description
PROSITE profilePS5015710.975784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MADPNLVYDF WNQQQYSNST EMVMMSDINV ASHLNQQQQP IPIPKPNKPK VQPSRMFSCL  60
YCSRKFCTSQ ALGGHQNAHK RERAASRRTM FPVTGTDSDN RNMVHFHFLQ NNNNDKQLEP  120
SLNNYPLMTG QMLPEQNIID INGNINHTTT TTYSNPYANY CSGQLQTPAS NNINVFNPFS  180
SSDVFHPPPV PTLGLGGRHV YFTSGDATLS TAQDLSSMDN HQLNLDLTLR L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800278.11e-173PREDICTED: uncharacterized protein LOC104246211
RefseqXP_016488862.11e-173PREDICTED: uncharacterized protein LOC107808811
TrEMBLM1BSW67e-44M1BSW6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000521702e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-15C2H2 family protein